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--- st-society-classes2014 [2014/12/01 06:42]
gilberto
+++ st-society-classes2014 [2015/01/26 13:40]
gilberto [Papers for Final Projects]
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 |    |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-introd.ppt|Introduction}} | | | |
 |2  |Lua for TerraME| | |
-|    |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-lua-terrame-basics.ppt|Lua for TerraME}}    | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/code-introduction.zip|Lua Examples}} |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/stis_exercise1_2014.pdf| Exercise 01}} {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/util.lua| Utility functions}}{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/sample.bib| Sample Latex bibliography}} |
+|    |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-lua-terrame-basics.ppt|Lua for TerraME}}    | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/code-introduction.zip|Lua Examples}} |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/stis_exercise1_2014.pdf| Exercise 01}} {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/sample.bib| Sample Latex bibliography}} |
 |3  |System Dynamics| | |
 |    |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-systems-theory.ppt|Systems Theory}}    | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/code-systems-theory.zip|Code for Systems Theory class}}  | |
@@ Line 17: / Line 17: @@
 |    |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-daisyworld.pptx|Daisyworld}}{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/daisyworld_review.pdf|Daisyworld review paper}}   | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/daisyworld-models.zip| Daisyworld model}} |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/daisyworld_sessini.pdf| Daisyworld on Cellular Automata (reference for exercise 3}}|
 |4 |Celular Automata | | |
-|    |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-cellular-automata.ppt|Cellular Automata}}    |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/ca-models.zip|The Game of Life (CA model)}} |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/exercise-cellular-automata-2014.pdf| Exercise 03 - Cellular Automata}}  |
+|    |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-cellular-automata.ppt|Cellular Automata}}    |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/code-cellular-automata.zip|CA models (Wolfram and Life)}} |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/exercise-cellular-automata-2014.pdf| Exercise 03 - Cellular Automata}}  |
-|5  |Agent-based modelling| | |
+|5 |Models in Cell Spaces | | |
-| | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-agent-based-modelling.ppt|Agent-based modelling}}    | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/code-schelling.zip|SegregationModel}}{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/exercise-segregation.pdf|Segregation Class Exercise}}| {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/butterfly-model.pdf|Ex 03 - Butterfly Model}} {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/barros_city_model.pdf| Ex 04 - Barros City Models}}|
+|    |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-hydrological-model.ppt|Hydrological Model}}    |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/code-hydrological-model.zip|Water runoff model}} |  |
-|6 |Societal modelling| | |
+|    |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-fire-in-the-forest.ppt|Fire Propagation}}    |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/code-fire-propagation.zip|Fire Spread Model}} |{{http://mtc-m19.sid.inpe.br/col/sid.inpe.br/mtc-m19/2012/11.01.13.13/doc/publicacao.pdf| PhD thesis in Fire Propagation}}  |
-|   | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-sugarscape.ppt|Sugarscape}}              |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/code-sugarscape.zip|Code Sugarscape}}     |  {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/exercise-sugarscape.pdf| Exercise Sugarscape}} |
+|6  |Agent-based modelling| | |
-|    |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-game-theory.ppt|Game Theory}}             | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/code-game-theory.zip|Prisioner's Dilemma}}     | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/exercise-game-theory.pdf| Variations on Prisioner's Dilemma}} |
+| | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-agent-based-modelling.ppt|ABM Lecture}}  | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/code-abm.zip|ABM Examples}}| |
-|   | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-cooperation.ppt|Evolution of Cooperation}}              |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/code-cooperation.zip|Code Evolution of Cooperation}}     |  {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/exercise-evolution-cooperation.pdf| Cooperation Models}} |
+| | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-urban-models.pptx|Urban Models}}  | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/code-barros-model.zip|Barros City Model}}| {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/barros-phd-thesis.pdf| Barros PhD Thesis}}   {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/exercise-urban-models-2015.pdf| Ex 04 - Extensions of Barros City Models}}|
-|7 |Land Change| | |
+|7 |Societal modelling| | |
+|    |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-game-theory.ppt|Game Theory and Evolution of Cooperation}}             | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/code-game-theory.zip|Game Theory}}     | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/exercise-game-theory.pdf| Ex-05 Variations on Prisioner's Dilemma}} |
+|   | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-sugarscape.ppt|Sugarscape}}              |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/code-sugarscape.zip|Code Sugarscape}}     |  {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/exercise-sugarscape.pdf|Exercise Sugarscape }} |
+|8 |Land Change| | |
 | | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-deforestation-amazonia.ppt|A Case Study: Land Change in Amazonia}}| | |
 | | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-land-change-database.ppt|Building a Land Change Database}}     | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/data-amazonia.zip|Deforestation data}}  | |
-| | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-land-change-modelling.ppt|Land Change Modelling}}     | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/amazonia-database.zip|Databases}}, {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/code-deforestation.zip|Scripts}}  |  {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/exercise-deforestation.pdf|Deforestation Model}} + {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/code-modelling-deforestation.zip|Scripts}}|
+| | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-land-change-modelling.ppt|Land Change Modelling}}     | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/amazonia-database.zip|Databases}}, {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/code-deforestation.zip|Scripts}}  |  {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/exercise-deforestation.pdf|Deforestation Model}} + {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/code-modelling-deforestation.zip|Scripts }}|
-\\
+==== Additional library for the course ====
+We have created an additional TerraME library to help with the course examples and exercises.
+Install the {{http://www.dpi.inpe.br/gilberto/cursos/terrame/courselib.zip|Library for teaching TerraME}} in the directory <TerraME directory/contrib/courselib>. In Windows, this should be C:/TerraME/contrib/courselib. In Mac and Linux, this should be /usr/local/terrame/contrib/courselib. Create the subdirectory <TerraME directory/contrib/> is it does not already exist.
 ===== Papers for Final Projects =====
 The final project consists of an implementation and discussion of an ABM model. Each of the references below contains a description of a model.
-| | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/gas_book_chap3.pdf|Sex, Culture and Conflict in SugarScape}}. From J Epstein, R. Axtell, Growing Artificial Societies: Social Science from the Bottom Up. MIT Press, 1996.|
+| Emily Harason| {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/gas_book_chap3.pdf|Sex, Culture and Conflict in SugarScape}}. From J Epstein, R. Axtell, Growing Artificial Societies: Social Science from the Bottom Up. MIT Press, 1996.|
 |  | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/gas_book_chap4.pdf|Trade in SugarScape}}. From J Epstein, R. Axtell, Growing Artificial Societies: Social Science from the Bottom Up. MIT Press, 1996.|
-|  | {{http://www.openabm.org/model/3163/version/2/view|S Bergin (2012). Torsten Hägerstrand’s Spatial Innovation Diffusion Model. Available in CoMSES Computational Model Library.}}|
+| Nikolai Gorte | {{http://www.openabm.org/model/3163/version/2/view|S Bergin (2012). Torsten Hägerstrand’s Spatial Innovation Diffusion Model. Available in CoMSES Computational Model Library.}}|
-|  | {{http://jasss.soc.surrey.ac.uk/16/4/11.html|S Heckbert (2014). MayaSim: An agent-based model of the ancient Maya social-ecological system.}}{{http://www.openabm.org/model/3063/version/4/view| Available in CoMSES Computational Model Library.}}|
+| Fabian Röhr | {{http://jasss.soc.surrey.ac.uk/16/4/11.html|S Heckbert (2014). MayaSim: An agent-based model of the ancient Maya social-ecological system.}}{{http://www.openabm.org/model/3063/version/4/view| Available in CoMSES Computational Model Library.}}|
-| |{{http://www.openabm.org/model/3705/version/2/view| R Axelrod (1997). “The dissemination of culture - A model with local convergence and global polarization.” Journal of Conflict Resolution 41: 203-226.Replicated in CoMSES Computational Model Library.}}|
+|Heinrich Löwen |{{http://www.openabm.org/model/3705/version/2/view| R Axelrod (1997). “The dissemination of culture - A model with local convergence and global polarization.” Journal of Conflict Resolution 41: 203-226.Replicated in CoMSES Computational Model Library.}}|
-|  | {{http://www.openabm.org/model/3377/version/1/view|J Pepper and B Smuts (2000). The evolution of cooperation in an ecological context: an agent-based model. Replicated in CoMSES Computational Model Library.}}|
+| Stefan Fuerst | {{http://www.openabm.org/model/3377/version/1/view|J Pepper and B Smuts (2000). The evolution of cooperation in an ecological context: an agent-based model. Replicated in CoMSES Computational Model Library.}}|
 |  | {{http://www.openabm.org/model/3890/version/2/view|K Kahn (2014) A model of the Spanish Flu Pandemic. Available in CoMSES Computational Model Library.}}|
-|  | {{http://www.openabm.org/model/3051/version/1/view|Schindler J (2012) A simple Multi-Agent System of the Tragedy Of the Commons. Available in CoMSES Computational Model Library.}}|
+|Sebastian Niklasch | {{http://www.openabm.org/model/3051/version/1/view|Schindler J (2012) A simple Multi-Agent System of the Tragedy Of the Commons. Available in CoMSES Computational Model Library.}}|
-|  | {{http://www.openabm.org/model/2762/version/1/view| A K Knittel, R Riolo and R Snow (2011). Development and evaluation of an agent-based model of sexual partnership. Adaptive Behavior (available at CoMSES Computational Model Library.}}|.
+| Simon Schoemaker | {{http://www.openabm.org/model/2762/version/1/view| A K Knittel, R Riolo and R Snow (2011). Development and evaluation of an agent-based model of sexual partnership. Adaptive Behavior (available at CoMSES Computational Model Library.}}|.
 |  | {{http://www.openabm.org/model/2274/version/2/view| M Janssen and N.D. Rollins (2012). Evolution of cooperation in asymmetric commons dilemmas. Journal of Economic Behavior and Organization, 81: 220-229. Available in CoMSES Computational Model Library).}}|
-|  | {{http://www.openabm.org/model/2222/version/2/view|Axtell, Epstein, et al. (2002) Population Growth and Collapse in a Multi-Agent Model of the Kayenta Anasazi in Long House Valley. PNAS 99(3): 7275-7279.  Replicated in M Janssen and available in CoMSES Computational Model Library.}}|
+| Ahmed Hussein | {{http://www.openabm.org/model/2222/version/2/view|Axtell, Epstein, et al. (2002) Population Growth and Collapse in a Multi-Agent Model of the Kayenta Anasazi in Long House Valley. PNAS 99(3): 7275-7279.  Replicated in M Janssen and available in CoMSES Computational Model Library.}}|
 |  | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/Bandini2007.pdf|S Bandini, F Celada, S Manzoni, G Vizzari (2007). Modelling the immune system: the case of situated cellular agents, Natural Computing, 6(1):19-32.}}|
 | | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/Balzter1998.pdf|H. Balzter, P. W. Braun, W. Köhler (1998) Cellular automata models for vegetation dynamics. Ecological Modelling 107(2-3):113-125}}|
-| | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/Berjak2002.pdf|S. G. Berjak,  J. W. Hearne (2002) An improved cellular automaton model for simulating fire in a spatially heterogeneous Savanna system. Ecological Modelling 148(2):133–15}}|
+| Daniel Schumaker| {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/Berjak2002.pdf|S. G. Berjak,  J. W. Hearne (2002) An improved cellular automaton model for simulating fire in a spatially heterogeneous Savanna system. Ecological Modelling 148(2):133–15}}|
-|  | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/Yassemi2008.pdf|S. Yassemi, S. Dragićevića, M. Schmidt(2008), Design and implementation of an integrated GIS-based cellular automata model to characterize forest fire behaviour, Ecological Modelling, 210(1–2), 71–84}}|
+| Daniel Sawatzky | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/Yassemi2008.pdf|S. Yassemi, S. Dragićevića, M. Schmidt(2008), Design and implementation of an integrated GIS-based cellular automata model to characterize forest fire behaviour, Ecological Modelling, 210(1–2), 71–84}}|
-| | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/Sirakoulis2000.pdf|G.Ch Sirakoulis, I. Karafyllidis, A. Thanailakis (2000) A cellular automaton model for the effects of population movement and vaccination on epidemic propagation. Ecological Modelling 133(3): 209–223}}|
+|Rene Unrau | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/Sirakoulis2000.pdf|G.Ch Sirakoulis, I. Karafyllidis, A. Thanailakis (2000) A cellular automaton model for the effects of population movement and vaccination on epidemic propagation. Ecological Modelling 133(3): 209–223}}|
-|  | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/White2007.pdf|S. Hoya White, A. Martín del Rey, G. Rodríguez Sánchez(2007), Modeling epidemics using cellular automata. Applied Mathematics and Computation, 186(1):193-202}}|
+| Yusi Ji | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/White2007.pdf|S. Hoya White, A. Martín del Rey, G. Rodríguez Sánchez(2007), Modeling epidemics using cellular automata. Applied Mathematics and Computation, 186(1):193-202}}|
-| | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/Beauchemin2005.pdf|C. Beauchemin, J. Samuel, J. Tuszynskia (2005) A simple cellular automaton model for influenza A viral infections. Journal of Theoretical Biology 232(2) 223–234}}|
+|Alexander Shirokow, Lars Syfuß | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/Beauchemin2005.pdf|C. Beauchemin, J. Samuel, J. Tuszynskia (2005) A simple cellular automaton model for influenza A viral infections. Journal of Theoretical Biology 232(2) 223–234}}|
-| | {{http://www.plosntds.org/article/info%3Adoi%2F10.1371%2Fjournal.pntd.0000942|Medeiros, L. C., Castilho, C. A. R., Braga, C., de Souza, W. V., Regis, L., Monteiro, A. M. V. (2011). Modeling the dynamic transmission of dengue fever: investigating disease persistence. PLOS neglected tropical diseases, 5(1), e942.}}|
+| Pradeep Kumar| {{http://www.plosntds.org/article/info%3Adoi%2F10.1371%2Fjournal.pntd.0000942|Medeiros, L. C., Castilho, C. A. R., Braga, C., de Souza, W. V., Regis, L., Monteiro, A. M. V. (2011). Modeling the dynamic transmission of dengue fever: investigating disease persistence. PLOS neglected tropical diseases, 5(1), e942.}}|
 | | {{http://www.hks.harvard.edu/netgov/files/fellows/onnela_j/papers/A7.pdf| R. Toivonen, J. Onnela, J. Saramaki, J. Hyvonen, K. Kaski (2006) A model for social networks. Physica A: Statistical Mechanics and its Applications 371(2):851–860}}|
-| | {{http://www.scs-europe.net/conf/ecms2011/ecms2011%20accepted%20papers/ibs_ECMS_0044.pdf| Sławomir Nikiel (2012) Game logic simulation based on Cellular automata and flocking techniques}}|
+|Jigeeshu Joshi | {{http://www.scs-europe.net/conf/ecms2011/ecms2011%20accepted%20papers/ibs_ECMS_0044.pdf| Sławomir Nikiel (2012) Game logic simulation based on Cellular automata and flocking techniques}}|
-| | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/Feitosa2012.pdf| F. Feitosa, A.M. Monteiro, Urban Conventions and Residential Location Choice. CAMUSS Conference (Cellular Automata Modeling forUrban and Spatial Systems 2012)}}|
+|Nadezhda Kutsenko  | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/Feitosa2012.pdf| F. Feitosa, A.M. Monteiro, Urban Conventions and Residential Location Choice. CAMUSS Conference (Cellular Automata Modeling forUrban and Spatial Systems 2012)}}|

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