st-society-classes2015
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st-society-classes2015 [2015/11/27 06:44] gilberto [Papers for Final Projects] |
st-society-classes2015 [2016/02/25 17:18] (current) gilberto |
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| ^Ref ^ Topic ^Models ^ Exercise | | ^Ref ^ Topic ^Models ^ Exercise | | ||
| |1 |Introduction| | | | |1 |Introduction| | | | ||
| - | | |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-introd.ppt|Introduction}} | | | | | + | | |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-introd.ppt|Introduction}} | | | | |
| |2 |Lua for TerraME| | | | |2 |Lua for TerraME| | | | ||
| - | | |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-lua-terrame-basics.ppt|Lua for TerraME}} | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/code-introduction.zip|Lua Examples}} |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/stis_exercise1_2014.pdf| Exercise 01}} {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/sample.bib| Sample Latex bibliography}} | | + | | |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-lua-terrame-basics.ppt|Lua for TerraME}} | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/code-introduction.zip|Lua Examples}} |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/exercise-lua_programs.pdf| Exercise 01}} | |
| |3 |System Dynamics| | | | |3 |System Dynamics| | | | ||
| - | | |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-systems-theory.ppt|Systems Theory}} | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/code-systems-theory.zip|Code for Systems Theory class}} | | | + | | |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-systems-theory.ppt|Systems Theory}} | | | |
| - | | |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-mono-lake.ppt|Water Flows in Mono Lake}} | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/code-mono-lake.zip|Mono Lake Code in TerraME}} |{{http://public.wsu.edu/~forda/Ch%205%20Extra.pdf|Exercise 2 - The Brine Shrimp of Mono Lake}}| | + | | |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-mono-lake.ppt|Water Flows in Mono Lake}} | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/monolake.lua|Mono Lake Code in TerraME}} |{{http://public.wsu.edu/~forda/Ch%205%20Extra.pdf|Exercise 2 - The Brine Shrimp of Mono Lake}}| |
| - | | |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-daisyworld.pptx|Daisyworld}}{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/daisyworld_review.pdf|Daisyworld review paper}} | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/daisyworld-models.zip| Daisyworld model}} |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/daisyworld_sessini.pdf| Daisyworld on Cellular Automata (reference for exercise 3}}| | + | | |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-daisyworld.pptx|Daisyworld}}{{http://www.dpi.inpe.br/gilberto/cursos/st-society/daisyworld_review.pdf|Daisyworld review paper}} | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/daisyworld.lua| Daisyworld model}} |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/daisyworld_sessini.pdf| Daisyworld on Cellular Automata (reference for exercise 3}}| |
| |4 |Celular Automata | | | | |4 |Celular Automata | | | | ||
| - | | |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-cellular-automata.ppt|Cellular Automata}} |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/code-cellular-automata.zip|CA models (Wolfram and Life)}} |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/exercise-cellular-automata-2014.pdf| Exercise 03 - Cellular Automata}} | | + | | |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-cellular-automata.ppt|Cellular Automata}} |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/life.lua|CA models (Game of Life)}} |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/exercise-cellular-automata.pdf| Exercise 03 - Cellular Automata}} | |
| - | |5 |Models in Cell Spaces | | | | + | |5 |Agent-based modelling| | | |
| - | | |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-hydrological-model.ppt|Hydrological Model}} |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/code-hydrological-model.zip|Water runoff model}} | | | + | | | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-agent-based-modelling.ppt|ABM Lecture}} | See ABM examples in TerraME logo package| | |
| - | | |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-fire-in-the-forest.ppt|Fire Propagation}} |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/code-fire-propagation.zip|Fire Spread Model}} |{{http://mtc-m19.sid.inpe.br/col/sid.inpe.br/mtc-m19/2012/11.01.13.13/doc/publicacao.pdf| PhD thesis in Fire Propagation}} | | + | | | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-segregation.ppt|Spatial Segregation}} | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/code-segregation.zip|Segregation}}| | |
| - | |6 |Agent-based modelling| | | | + | | | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-urban-models.pptx|Urban Models}} | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/code-barros-model.zip|Barros City Model}}| {{http://www.dpi.inpe.br/gilberto/cursos/st-society/barros-phd-thesis.pdf| Barros PhD Thesis}} {{http://www.dpi.inpe.br/gilberto/cursos/st-society/exercise-urban-models-2015.pdf| Exercise - Extensions of Barros City Models}}| |
| - | | | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-agent-based-modelling.ppt|ABM Lecture}} | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/code-abm.zip|ABM Examples}}| | | + | |6 |Societal modelling| | | |
| - | | | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-urban-models.pptx|Urban Models}} | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/code-barros-model.zip|Barros City Model}}| {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/barros-phd-thesis.pdf| Barros PhD Thesis}} {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/exercise-urban-models-2015.pdf| Ex 04 - Extensions of Barros City Models}}| | + | | |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-game-theory.ppt|Game Theory and Evolution of Cooperation}} | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/code-game-theory.zip|Game Theory}} | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/exercise-game-theory.pdf| Ex-05 Variations on Prisioner's Dilemma}} | |
| - | |7 |Societal modelling| | | | + | | | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-sugarscape.ppt|Sugarscape}} |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/code-sugarscape.zip|Code Sugarscape}} | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/exercise-sugarscape.pdf|Exercise Sugarscape }} | |
| - | | |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-game-theory.ppt|Game Theory and Evolution of Cooperation}} | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/code-game-theory.zip|Game Theory}} | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/exercise-game-theory.pdf| Ex-05 Variations on Prisioner's Dilemma}} | | + | |7 |Land Change| | | |
| - | | | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-sugarscape.ppt|Sugarscape}} |{{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/code-sugarscape.zip|Code Sugarscape}} | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/exercise-sugarscape.pdf|Exercise Sugarscape }} | | + | | | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-deforestation-amazonia.ppt|A Case Study: Land Change in Amazonia}}| | | |
| - | |8 |Land Change| | | | + | | | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-land-change-database.ppt|Building a Land Change Database}} | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/data-amazonia.zip|Deforestation data}} | | |
| - | | | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-deforestation-amazonia.ppt|A Case Study: Land Change in Amazonia}}| | | | + | | | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-land-change-modelling.ppt|Land Change Modelling}} | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/amazonia-database.zip|Databases}}, {{http://www.dpi.inpe.br/gilberto/cursos/st-society/code-deforestation.zip|Scripts}} | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/exercise-deforestation.pdf|Deforestation Model}} + {{http://www.dpi.inpe.br/gilberto/cursos/st-society/code-modelling-deforestation.zip|Scripts }}| |
| - | | | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-land-change-database.ppt|Building a Land Change Database}} | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/data-amazonia.zip|Deforestation data}} | | | + | |
| - | | | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/lecture-land-change-modelling.ppt|Land Change Modelling}} | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/amazonia-database.zip|Databases}}, {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/code-deforestation.zip|Scripts}} | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/exercise-deforestation.pdf|Deforestation Model}} + {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/code-modelling-deforestation.zip|Scripts }}| | + | |
| ===== Papers for Final Projects ===== | ===== Papers for Final Projects ===== | ||
| The final project consists of an implementation and discussion of an ABM model. Each of the references below contains a description of a model. | The final project consists of an implementation and discussion of an ABM model. Each of the references below contains a description of a model. | ||
| - | | | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/gas_book_chap3.pdf|Sex, Culture and Conflict in SugarScape}}. From J Epstein, R. Axtell, Growing Artificial Societies: Social Science from the Bottom Up. MIT Press, 1996.| | + | | Joanna | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/gas_book_chap3.pdf|Sex, Culture and Conflict in SugarScape}}. From J Epstein, R. Axtell, Growing Artificial Societies: Social Science from the Bottom Up. MIT Press, 1996.| |
| - | | | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/gas_book_chap4.pdf|Trade in SugarScape}}. From J Epstein, R. Axtell, Growing Artificial Societies: Social Science from the Bottom Up. MIT Press, 1996.| | + | | Nicholas | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/gas_book_chap4.pdf|Trade in SugarScape}}. From J Epstein, R. Axtell, Growing Artificial Societies: Social Science from the Bottom Up. MIT Press, 1996.| |
| | | {{http://www.openabm.org/model/3163/version/2/view|S Bergin (2012). Torsten Hägerstrand’s Spatial Innovation Diffusion Model. Available in CoMSES Computational Model Library.}}| | | | {{http://www.openabm.org/model/3163/version/2/view|S Bergin (2012). Torsten Hägerstrand’s Spatial Innovation Diffusion Model. Available in CoMSES Computational Model Library.}}| | ||
| - | | | {{http://jasss.soc.surrey.ac.uk/16/4/11.html|S Heckbert (2014). MayaSim: An agent-based model of the ancient Maya social-ecological system.}}{{http://www.openabm.org/model/3063/version/4/view| Available in CoMSES Computational Model Library.}}| | + | | André | {{http://jasss.soc.surrey.ac.uk/16/4/11.html|S Heckbert (2014). MayaSim: An agent-based model of the ancient Maya social-ecological system.}}{{http://www.openabm.org/model/3063/version/4/view| Available in CoMSES Computational Model Library.}}| |
| - | | |{{http://www.openabm.org/model/3705/version/2/view| R Axelrod (1997). “The dissemination of culture - A model with local convergence and global polarization.” Journal of Conflict Resolution 41: 203-226.Replicated in CoMSES Computational Model Library.}}| | + | | Lukas |{{http://www.openabm.org/model/3705/version/2/view| R Axelrod (1997). “The dissemination of culture - A model with local convergence and global polarization.” Journal of Conflict Resolution 41: 203-226.Replicated in CoMSES Computational Model Library.}}| |
| - | | | {{http://www.openabm.org/model/3377/version/1/view|J Pepper and B Smuts (2000). The evolution of cooperation in an ecological context: an agent-based model. Replicated in CoMSES Computational Model Library.}}| | + | |Oleg | {{http://www.openabm.org/model/3377/version/1/view|J Pepper and B Smuts (2000). The evolution of cooperation in an ecological context: an agent-based model. Replicated in CoMSES Computational Model Library.}}| |
| - | | | {{http://www.openabm.org/model/3890/version/2/view|K Kahn (2014) A model of the Spanish Flu Pandemic. Available in CoMSES Computational Model Library.}}| | + | |
| | | {{http://www.openabm.org/model/3051/version/1/view|Schindler J (2012) A simple Multi-Agent System of the Tragedy Of the Commons. Available in CoMSES Computational Model Library.}}| | | | {{http://www.openabm.org/model/3051/version/1/view|Schindler J (2012) A simple Multi-Agent System of the Tragedy Of the Commons. Available in CoMSES Computational Model Library.}}| | ||
| - | | | {{http://www.openabm.org/model/2762/version/1/view| A K Knittel, R Riolo and R Snow (2011). Development and evaluation of an agent-based model of sexual partnership. Adaptive Behavior (available at CoMSES Computational Model Library.}}|. | + | | Marius | {{http://www.openabm.org/model/2274/version/2/view| M Janssen and N.D. Rollins (2012). Evolution of cooperation in asymmetric commons dilemmas. Journal of Economic Behavior and Organization, 81: 220-229. Available in CoMSES Computational Model Library).}}| |
| - | | | {{http://www.openabm.org/model/2274/version/2/view| M Janssen and N.D. Rollins (2012). Evolution of cooperation in asymmetric commons dilemmas. Journal of Economic Behavior and Organization, 81: 220-229. Available in CoMSES Computational Model Library).}}| | + | |
| | | {{http://www.openabm.org/model/2222/version/2/view|Axtell, Epstein, et al. (2002) Population Growth and Collapse in a Multi-Agent Model of the Kayenta Anasazi in Long House Valley. PNAS 99(3): 7275-7279. Replicated in M Janssen and available in CoMSES Computational Model Library.}}| | | | {{http://www.openabm.org/model/2222/version/2/view|Axtell, Epstein, et al. (2002) Population Growth and Collapse in a Multi-Agent Model of the Kayenta Anasazi in Long House Valley. PNAS 99(3): 7275-7279. Replicated in M Janssen and available in CoMSES Computational Model Library.}}| | ||
| - | | | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/Bandini2007.pdf|S Bandini, F Celada, S Manzoni, G Vizzari (2007). Modelling the immune system: the case of situated cellular agents, Natural Computing, 6(1):19-32.}}| | + | | | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/Bandini2007.pdf|S Bandini, F Celada, S Manzoni, G Vizzari (2007). Modelling the immune system: the case of situated cellular agents, Natural Computing, 6(1):19-32.}}| |
| - | | | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/Balzter1998.pdf|H. Balzter, P. W. Braun, W. Köhler (1998) Cellular automata models for vegetation dynamics. Ecological Modelling 107(2-3):113-125}}| | + | | Axel | {{http://www.plosntds.org/article/info%3Adoi%2F10.1371%2Fjournal.pntd.0000942|Medeiros, L. C., Castilho, C. A. R., Braga, C., de Souza, W. V., Regis, L., Monteiro, A. M. V. (2011). Modeling the dynamic transmission of dengue fever: investigating disease persistence. PLOS neglected tropical diseases, 5(1), e942.}}| |
| - | | | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/Berjak2002.pdf|S. G. Berjak, J. W. Hearne (2002) An improved cellular automaton model for simulating fire in a spatially heterogeneous Savanna system. Ecological Modelling 148(2):133–15}}| | + | | Shankar | {{http://jasss.soc.surrey.ac.uk/18/2/12.html|Malik, A.A., Crooks, A.T., Root, H.L. and Swartz, M. (2015), Exploring Creativity and Urban Development through Agent-Based Modeling, Journal of Artificial Societies and Social Simulation}}. See also {http://gisagents.org/}| |
| - | | | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/Yassemi2008.pdf|S. Yassemi, S. Dragićevića, M. Schmidt(2008), Design and implementation of an integrated GIS-based cellular automata model to characterize forest fire behaviour, Ecological Modelling, 210(1–2), 71–84}}| | + | | Pawan | {{https://dl.dropboxusercontent.com/u/2696623/Website/Cholera.pdf|Crooks, A.T. and Hailegiorgis, A.B. (2014), An Agent-based Modeling Approach Applied to the Spread of Cholera, Environmental Modelling and Software, 62: 164-177}}. See also {{http://gisagents.org/}}| |
| - | | | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/Sirakoulis2000.pdf|G.Ch Sirakoulis, I. Karafyllidis, A. Thanailakis (2000) A cellular automaton model for the effects of population movement and vaccination on epidemic propagation. Ecological Modelling 133(3): 209–223}}| | + | | Avipsa | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/Feitosa2012.pdf| F. Feitosa, A.M. Monteiro, Urban Conventions and Residential Location Choice. CAMUSS Conference (Cellular Automata Modeling forUrban and Spatial Systems 2012)}} See also {{http://www.dpi.inpe.br/gilberto/cursos/st-society/feitosa_monteiro_kaleidoskopic_cities.ppt|this presentation}}| |
| - | | | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/White2007.pdf|S. Hoya White, A. Martín del Rey, G. Rodríguez Sánchez(2007), Modeling epidemics using cellular automata. Applied Mathematics and Computation, 186(1):193-202}}| | + | | | {{http://www.gisagents.org/search?updated-max=2015-03-31T13:14:00-04:00&max-results=5&start=10&by-date=false|Hogeweg, P. and Hesper, B. (1983), 'The Ontogeny of the Interaction Structure in Bumble Bee Colonies: A MIRROR Model', Behavioral Ecology and Sociobiology, 12(4): 271-283}}. Model reproduction available at {{http://gisagents.org}}| |
| - | | | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/Beauchemin2005.pdf|C. Beauchemin, J. Samuel, J. Tuszynskia (2005) A simple cellular automaton model for influenza A viral infections. Journal of Theoretical Biology 232(2) 223–234}}| | + | | Rehan | {{http://jasss.soc.surrey.ac.uk/15/4/2.html|Patel, A., Crooks, A.T. and Koizumi, N. (2012), Slumulation: an Agent-based Modeling Approach to Slum Formations}}. Journal of Artificial Societies and Social Simulation, 15 (4):2015.| |
| - | | | {{http://www.plosntds.org/article/info%3Adoi%2F10.1371%2Fjournal.pntd.0000942|Medeiros, L. C., Castilho, C. A. R., Braga, C., de Souza, W. V., Regis, L., Monteiro, A. M. V. (2011). Modeling the dynamic transmission of dengue fever: investigating disease persistence. PLOS neglected tropical diseases, 5(1), e942.}}| | + | |
| - | | | {{http://www.hks.harvard.edu/netgov/files/fellows/onnela_j/papers/A7.pdf| R. Toivonen, J. Onnela, J. Saramaki, J. Hyvonen, K. Kaski (2006) A model for social networks. Physica A: Statistical Mechanics and its Applications 371(2):851–860}}| | + | |
| - | | | {{http://www.scs-europe.net/conf/ecms2011/ecms2011%20accepted%20papers/ibs_ECMS_0044.pdf| Sławomir Nikiel (2012) Game logic simulation based on Cellular automata and flocking techniques}}| | + | |
| - | | | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/Feitosa2012.pdf| F. Feitosa, A.M. Monteiro, Urban Conventions and Residential Location Choice. CAMUSS Conference (Cellular Automata Modeling forUrban and Spatial Systems 2012)}}| | + | |
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