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 |    |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-introd.ppt|Introduction}} | | | |
 |2  |Lua for TerraME| | |
-|    |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-lua-terrame-basics.ppt|Lua for TerraME}}    | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/code-introduction.zip|Lua Examples}} |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/exercise-systems-theory.pdf| Exercise 01}} {{http://www.dpi.inpe.br/gilberto/cursos/st-society/sample.bib| Sample Latex bibliography}} |
+|    |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-lua-terrame-basics.ppt|Lua for TerraME}}    | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/code-introduction.zip|Lua Examples}} |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/exercise-lua_programs.pdf| Exercise 01}} |
 |3  |System Dynamics| | |
-|    |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-systems-theory.ppt|Systems Theory}}    | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/code-systems-theory.zip|Code for Systems Theory class}}  | |
+|    |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-systems-theory.ppt|Systems Theory}}    | | |
-|    |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-mono-lake.ppt|Water Flows in Mono Lake}}   | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/code-mono-lake.zip|Mono Lake Code in TerraME}} |{{http://public.wsu.edu/~forda/Ch%205%20Extra.pdf|Exercise 2 - The Brine Shrimp of Mono Lake}}|
+|    |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-mono-lake.ppt|Water Flows in Mono Lake}}   | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/monolake.lua|Mono Lake Code in TerraME}} |{{http://public.wsu.edu/~forda/Ch%205%20Extra.pdf|Exercise 2 - The Brine Shrimp of Mono Lake}}|
-|    |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-daisyworld.pptx|Daisyworld}}{{http://www.dpi.inpe.br/gilberto/cursos/st-society/daisyworld_review.pdf|Daisyworld review paper}}   | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/daisyworld-models.zip| Daisyworld model}} |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/daisyworld_sessini.pdf| Daisyworld on Cellular Automata (reference for exercise 3}}|
+|    |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-daisyworld.pptx|Daisyworld}}{{http://www.dpi.inpe.br/gilberto/cursos/st-society/daisyworld_review.pdf|Daisyworld review paper}}   | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/daisyworld.lua| Daisyworld model}} |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/daisyworld_sessini.pdf| Daisyworld on Cellular Automata (reference for exercise 3}}|
 |4 |Celular Automata | | |
-|    |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-cellular-automata.ppt|Cellular Automata}}    |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/code-cellular-automata.zip|CA models (Wolfram and Life)}} |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/exercise-cellular-automata.pdf| Exercise 03 - Cellular Automata}}  |
+|    |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-cellular-automata.ppt|Cellular Automata}}    |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/life.lua|CA models (Game of Life)}} |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/exercise-cellular-automata.pdf| Exercise 03 - Cellular Automata}}  |
-|5 |Models in Cell Spaces | | |
+|5  |Agent-based modelling| | |
-|    |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-hydrological-model.ppt|Hydrological Model}}    |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/code-hydrological-model.zip|Water runoff model}} |  |
+| | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-agent-based-modelling.ppt|ABM Lecture}}  | See ABM examples in TerraME logo package| |
-|    |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-fire-in-the-forest.ppt|Fire Propagation}}    |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/code-fire-propagation.zip|Fire Spread Model}} |{{http://mtc-m19.sid.inpe.br/col/sid.inpe.br/mtc-m19/2012/11.01.13.13/doc/publicacao.pdf| PhD thesis in Fire Propagation}}  |
+| | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-segregation.ppt|Spatial Segregation}}  | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/code-segregation.zip|Segregation}}| |
-|6  |Agent-based modelling| | |
+| | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-urban-models.pptx|Urban Models}}  | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/code-barros-model.zip|Barros City Model}}| {{http://www.dpi.inpe.br/gilberto/cursos/st-society/barros-phd-thesis.pdf| Barros PhD Thesis}}   {{http://www.dpi.inpe.br/gilberto/cursos/st-society/exercise-urban-models-2015.pdf| Exercise - Extensions of Barros City Models}}|
-| | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-agent-based-modelling.ppt|ABM Lecture}}  | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/code-abm.zip|ABM Examples}}| |
+|6 |Societal modelling| | |
-| | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-urban-models.pptx|Urban Models}}  | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/code-barros-model.zip|Barros City Model}}| {{http://www.dpi.inpe.br/gilberto/cursos/st-society/barros-phd-thesis.pdf| Barros PhD Thesis}}   {{http://www.dpi.inpe.br/gilberto/cursos/st-society/exercise-urban-models-2015.pdf| Ex 04 - Extensions of Barros City Models}}|
-|7 |Societal modelling| | |
 |    |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-game-theory.ppt|Game Theory and Evolution of Cooperation}}             | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/code-game-theory.zip|Game Theory}}     | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/exercise-game-theory.pdf| Ex-05 Variations on Prisioner's Dilemma}} |
 |   | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-sugarscape.ppt|Sugarscape}}              |{{http://www.dpi.inpe.br/gilberto/cursos/st-society/code-sugarscape.zip|Code Sugarscape}}     |  {{http://www.dpi.inpe.br/gilberto/cursos/st-society/exercise-sugarscape.pdf|Exercise Sugarscape }} |
-|8 |Land Change| | |
+|7 |Land Change| | |
 | | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-deforestation-amazonia.ppt|A Case Study: Land Change in Amazonia}}| | |
 | | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-land-change-database.ppt|Building a Land Change Database}}     | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/data-amazonia.zip|Deforestation data}}  | |
 | | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/lecture-land-change-modelling.ppt|Land Change Modelling}}     | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/amazonia-database.zip|Databases}}, {{http://www.dpi.inpe.br/gilberto/cursos/st-society/code-deforestation.zip|Scripts}}  |  {{http://www.dpi.inpe.br/gilberto/cursos/st-society/exercise-deforestation.pdf|Deforestation Model}} + {{http://www.dpi.inpe.br/gilberto/cursos/st-society/code-modelling-deforestation.zip|Scripts }}|
 ===== Papers for Final Projects =====
 The final project consists of an implementation and discussion of an ABM model. Each of the references below contains a description of a model.
-| | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/gas_book_chap3.pdf|Sex, Culture and Conflict in SugarScape}}. From J Epstein, R. Axtell, Growing Artificial Societies: Social Science from the Bottom Up. MIT Press, 1996.|
+| Joanna | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/gas_book_chap3.pdf|Sex, Culture and Conflict in SugarScape}}. From J Epstein, R. Axtell, Growing Artificial Societies: Social Science from the Bottom Up. MIT Press, 1996.|
-|  | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/gas_book_chap4.pdf|Trade in SugarScape}}. From J Epstein, R. Axtell, Growing Artificial Societies: Social Science from the Bottom Up. MIT Press, 1996.|
+| Nicholas  | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/gas_book_chap4.pdf|Trade in SugarScape}}. From J Epstein, R. Axtell, Growing Artificial Societies: Social Science from the Bottom Up. MIT Press, 1996.|
 | | {{http://www.openabm.org/model/3163/version/2/view|S Bergin (2012). Torsten Hägerstrand’s Spatial Innovation Diffusion Model. Available in CoMSES Computational Model Library.}}|
-|  | {{http://jasss.soc.surrey.ac.uk/16/4/11.html|S Heckbert (2014). MayaSim: An agent-based model of the ancient Maya social-ecological system.}}{{http://www.openabm.org/model/3063/version/4/view| Available in CoMSES Computational Model Library.}}|
+| André | {{http://jasss.soc.surrey.ac.uk/16/4/11.html|S Heckbert (2014). MayaSim: An agent-based model of the ancient Maya social-ecological system.}}{{http://www.openabm.org/model/3063/version/4/view| Available in CoMSES Computational Model Library.}}|
-| |{{http://www.openabm.org/model/3705/version/2/view| R Axelrod (1997). “The dissemination of culture - A model with local convergence and global polarization.” Journal of Conflict Resolution 41: 203-226.Replicated in CoMSES Computational Model Library.}}|
+| Lukas |{{http://www.openabm.org/model/3705/version/2/view| R Axelrod (1997). “The dissemination of culture - A model with local convergence and global polarization.” Journal of Conflict Resolution 41: 203-226.Replicated in CoMSES Computational Model Library.}}|
-|  | {{http://www.openabm.org/model/3377/version/1/view|J Pepper and B Smuts (2000). The evolution of cooperation in an ecological context: an agent-based model. Replicated in CoMSES Computational Model Library.}}|
+|Oleg  | {{http://www.openabm.org/model/3377/version/1/view|J Pepper and B Smuts (2000). The evolution of cooperation in an ecological context: an agent-based model. Replicated in CoMSES Computational Model Library.}}|
-|  | {{http://www.openabm.org/model/3890/version/2/view|K Kahn (2014) A model of the Spanish Flu Pandemic. Available in CoMSES Computational Model Library.}}|
 | | {{http://www.openabm.org/model/3051/version/1/view|Schindler J (2012) A simple Multi-Agent System of the Tragedy Of the Commons. Available in CoMSES Computational Model Library.}}|
-| | {{http://www.openabm.org/model/2762/version/1/view| A K Knittel, R Riolo and R Snow (2011). Development and evaluation of an agent-based model of sexual partnership. Adaptive Behavior (available at CoMSES Computational Model Library.}}|.
+| Marius | {{http://www.openabm.org/model/2274/version/2/view| M Janssen and N.D. Rollins (2012). Evolution of cooperation in asymmetric commons dilemmas. Journal of Economic Behavior and Organization, 81: 220-229. Available in CoMSES Computational Model Library).}}|
-|  | {{http://www.openabm.org/model/2274/version/2/view| M Janssen and N.D. Rollins (2012). Evolution of cooperation in asymmetric commons dilemmas. Journal of Economic Behavior and Organization, 81: 220-229. Available in CoMSES Computational Model Library).}}|
 |  | {{http://www.openabm.org/model/2222/version/2/view|Axtell, Epstein, et al. (2002) Population Growth and Collapse in a Multi-Agent Model of the Kayenta Anasazi in Long House Valley. PNAS 99(3): 7275-7279.  Replicated in M Janssen and available in CoMSES Computational Model Library.}}|
-|  | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/Bandini2007.pdf|S Bandini, F Celada, S Manzoni, G Vizzari (2007). Modelling the immune system: the case of situated cellular agents, Natural Computing, 6(1):19-32.}}|
+|  | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/Bandini2007.pdf|S Bandini, F Celada, S Manzoni, G Vizzari (2007). Modelling the immune system: the case of situated cellular agents, Natural Computing, 6(1):19-32.}}|
-| | {{http://www.plosntds.org/article/info%3Adoi%2F10.1371%2Fjournal.pntd.0000942|Medeiros, L. C., Castilho, C. A. R., Braga, C., de Souza, W. V., Regis, L., Monteiro, A. M. V. (2011). Modeling the dynamic transmission of dengue fever: investigating disease persistence. PLOS neglected tropical diseases, 5(1), e942.}}|
+| Axel | {{http://www.plosntds.org/article/info%3Adoi%2F10.1371%2Fjournal.pntd.0000942|Medeiros, L. C., Castilho, C. A. R., Braga, C., de Souza, W. V., Regis, L., Monteiro, A. M. V. (2011). Modeling the dynamic transmission of dengue fever: investigating disease persistence. PLOS neglected tropical diseases, 5(1), e942.}}|
-| | {{http://www.hks.harvard.edu/netgov/files/fellows/onnela_j/papers/A7.pdf| R. Toivonen, J. Onnela, J. Saramaki, J. Hyvonen, K. Kaski (2006) A model for social networks. Physica A: Statistical Mechanics and its Applications 371(2):851–860}}|
+| Shankar | {{http://jasss.soc.surrey.ac.uk/18/2/12.html|Malik, A.A., Crooks, A.T., Root, H.L. and Swartz, M. (2015), Exploring Creativity and Urban Development through Agent-Based Modeling, Journal of Artificial Societies and Social Simulation}}. See also {http://gisagents.org/}|
-|  | {{http://www.dpi.inpe.br/gilberto/cursos/st-society-2014/Feitosa2012.pdf| F. Feitosa, A.M. Monteiro, Urban Conventions and Residential Location Choice. CAMUSS Conference (Cellular Automata Modeling forUrban and Spatial Systems 2012)}}|
+| Pawan | {{https://dl.dropboxusercontent.com/u/2696623/Website/Cholera.pdf|Crooks, A.T. and Hailegiorgis, A.B. (2014), An Agent-based Modeling Approach Applied to the Spread of Cholera, Environmental Modelling and Software, 62: 164-177}}. See also {{http://gisagents.org/}}|
+| Avipsa | {{http://www.dpi.inpe.br/gilberto/cursos/st-society/Feitosa2012.pdf| F. Feitosa, A.M. Monteiro, Urban Conventions and Residential Location Choice. CAMUSS Conference (Cellular Automata Modeling forUrban and Spatial Systems 2012)}} See also {{http://www.dpi.inpe.br/gilberto/cursos/st-society/feitosa_monteiro_kaleidoskopic_cities.ppt|this presentation}}|
+|   | {{http://www.gisagents.org/search?updated-max=2015-03-31T13:14:00-04:00&max-results=5&start=10&by-date=false|Hogeweg, P. and Hesper, B. (1983), 'The Ontogeny of the Interaction Structure in Bumble Bee Colonies: A MIRROR Model', Behavioral Ecology and Sociobiology, 12(4): 271-283}}. Model reproduction available at {{http://gisagents.org}}|
+| Rehan  | {{http://jasss.soc.surrey.ac.uk/15/4/2.html|Patel, A., Crooks, A.T. and Koizumi, N. (2012), Slumulation: an Agent-based Modeling Approach to Slum Formations}}. Journal of Artificial Societies and Social Simulation, 15 (4):2015.|

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